Sample information curated by ChIP-Atlas

Antigen

Antigen Class
TFs and others
Antigen
CTCF

Cell type

Cell type Class
Placenta
Cell type
Placenta
MeSH Description
A highly vascularized mammalian fetal-maternal organ and major site of transport of oxygen, nutrients, and fetal waste products. It includes a fetal portion (CHORIONIC VILLI) derived from TROPHOBLASTS and a maternal portion (DECIDUA) derived from the uterine ENDOMETRIUM. The placenta produces an array of steroid, protein and peptide hormones (PLACENTAL HORMONES).

Attributes by original data submitter

Sample

age
unknown
sample type
tissue
tissue
placenta
sex
male
dev stage
embryonic
donor ID
ENCDO225QCT
lab
Bradley Bernstein, Broad
source
John Stamatoyannopoulos

Sequenced DNA Library

library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
general protocol: https://www.encodeproject.org/documents/be2a0f12-af38-430c-8f2d-57953baab5f5/@@download/attachment/Epigenomics_Alternative_Mag_Bead_ChIP_Protocol_v1.1_exp.pdf

Sequencing Platform

instrument_model
NextSeq 500

hg38

Number of total reads
29657986
Reads aligned (%)
98.7
Duplicates removed (%)
5.2
Number of peaks
2876 (qval < 1E-05)

hg19

Number of total reads
29657986
Reads aligned (%)
97.6
Duplicates removed (%)
6.6
Number of peaks
2926 (qval < 1E-05)

Base call quality data from DBCLS SRA